邓晔，男，1978年12月出生于湖南长沙，中共党员，中国科学院生态环境研究中心研究员，中国科学院大学岗位教授，博导。现任中国生态学学会微生物生态专业委员会秘书长，《The ISME Journal》资深主编，《Microbiome》、《Environmental Microbiome》副主编等。
2002年毕业于中南大学应用化学专业，2007年获得浙江大学生物化学与分子生物学博士学位。2007年-2014年在美国俄克拉荷马大学环境基因组研究所任研究科学家。2014年5月，就职于中国科学院生态环境研究中心，组建环境微生物宏基因组研究组。 研究工作围绕环境微生物群落生态学开展，开发微生物基因组学数据分析方法并构建分析平台，对全球气候变化下微生物功能类群的演变规律以及微生物地理学分布机制开展了一系列创新性的工作。

取得的研究结果包括： （1）通过构建的分子生态网络和跨营养级互作网络方法，定量微生物之间及微生物与森林植物间的依存关系并解析群落的稳定性。阐明年均温控制森林微生物分布格局的生态机理，揭示物种互作网络对温度等环境因素的响应特征。（2）发现了细菌、真菌群落和固氮功能菌群的 多样性均遵循生态代谢理论，证明了温度是森林土壤微生物多样性纬度梯度格局的主控因素。首次把温度与生物多样性的关系从地上带入了地下生物的世界。（3）整合大数据和气候模型，提出了宏观与微观相结合的数据整合策略，并形成了气候-微生物-土壤环境相关联的生态预测模型。

迄今在各类SCI杂志上已发表研究论文200多篇，包括Science, PNAS, Nature Climate Change, Nature Microbiology等，文章总引用21000余次，H-index为71。2018-2022年连续五年获科睿唯安(Web of Science)全球高被引科学家，入选斯坦福大学全球2%高影响力学者。2019年中科院人才项目终期评估优秀。作为分子生态网络方法的创建人，最高单篇被引为1600余次。担任第三次全国土壤普查技术工作组成员、国际微生物生态学会（ISME）大使等学术兼职；任国家科技部重点研发项目以及荷兰、奥地利、瑞士等国家基金项目的评审专家。

Jing Tian#*, Jennifer Dungait#*, Ruixing Hou#, Ye Deng#, Iain Hartley, Yunfeng Yang, Yakov Kuzyakov, Fusuo Zhang*, M. Francesca Cotrufo*, Jizhong Zhou*. Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming. Nature Communications, 2024, 15: 377.

Qing He, Shang Wang*, Kai Feng, Sean T Michaletz, Weiguo Hou, Wenhui Zhang, Fangru Li, Yidi Zhang, Danrui Wang, Xi Peng, Xingsheng Yang, Ye Deng*. High speciation rate of niche specialists in hot springs. The ISME Journal, 2023, 17:1303-1314.

Danrui Wang, Jiangtao Li, Lei Su, Wenli Shen, Kai Feng, Xi Peng, Zhujun Wang, Bo Zhao, Zheng Zhang, Zhaojing Zhang, Étienne Yergeau, Ye Deng. Phylogenetic diversity of functional genes in deep-sea cold seeps: a novel perspective on metagenomics. Microbiome, 2023, 11: 276.

Zheng Zhang, Jiang Li*, Hongjun Li, Linlin Wang, Yuqi Zhou, Shuzhen Li, Zhaojing Zhang, Kai Feng, Ye Deng*. Environmental DNA metabarcoding reveals the influence of human activities on microeukaryotic plankton along the Chinese coastline. Water Research, 2023, 233: 119730

Haijuan Zhang†, Kaifu Zheng†, Songsong Gu, Yingcheng Wang, Xueli Zhou, Huilin Yan, Kun Ma, Yangan Zhao, Xin Jin, Guangxin Lu*, Ye Deng*. Grass–Legume Mixture with Rhizobium Inoculation Enhanced the Restoration Effects of Organic Fertilizer. Microorganisms, 2023, 11(5), 1114

Lingzhan Miao, Wanyi Li, Tanveer M. Adyel, Yu Yao, Ye Deng*, Jun Wu, Yongqiang Zhou, Yue Yu, Jun Hou*. Spatio-temporal succession of microbial communities in plastisphere and their potentials for plastic degradation in freshwater ecosystems. Water Research, 2023, 229: 119406.

Shuzhen Li, Wenli Shen, Shenyang Lian, Yueni Wu, Yuanyuan Qu, Ye Deng*. DARHD: a sequence database for aromatic ring-hydroxylating dioxygenase analysis and primer evaluation. Journal of Hazardous Materials, 2022, 436: 129230.

Ziyan Wei, Wenli Shen, Kai Feng, Youzhi Feng, Zhili He, Yan Li, Chengying Jiang, Shuangjiang Liu, Yong-Guan Zhu, Ye Deng*. Organic fertilizer potentiates the transfer of typical antibiotic resistance gene among special bacterial species. Journal of Hazardous Materials, 2022, 435: 128985.

Yuqi Zhou#, Baoyu Sun#, Baohua Xie, Kai Feng, Zhaojing Zhang, Zheng Zhang, Shuzhen Li, Xiongfeng Du, Qi Zhang, Songsong Gu, Wen Song, Linlin Wang, Jianyang Xia, Guangxuan Han*, Ye Deng*. Warming reshaped the microbial hierarchical interactions. Global Change Biology, 2021. 27(24):6331-6347.

Ziyan Wei, Kai Feng, Zhujun Wang, Yu Zhang, Min Yang, Yong-Guan Zhu, Marko P. J. Virta, and Ye Deng*. High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants. Environmental Science & Technology, 2021, 55(17): 11824-11834.

Shang Wang#, Xuelian Bao#, Kai Feng#, Ye Deng*, Wenjun Zhou, Pengshuai Shao, Tiantian Zheng, Fei Yao, Shan Yang, Shengen Liu, Rongjiu Shi, Zhen Bai, Hongtu Xie, Jinghua Yu, Ying Zhang, Yiping Zhang, Liqing Sha, Qinghai Song, Yuntong Liu, Jizhong Zhou, Yuguang Zhang, Hui Li, Qingkui Wang, Xingguo Han, Yongguan Zhu, Chao Liang*. Warming-driven migration of core microbiota projects soil property changes at continental scale. Science Bulletin, 2021, 66(19):2025-2035.

Zhaojing Zhang, Yuanyuan Qu*, Shuzhen Li, Kai Feng, Weiwei Cai, Huaqun Yin, Shang Wang, Wenzong Liu, Aijie Wang, Ye Deng*. Florfenicol restructured the microbial interaction network for wastewater treatment by microbial electrolysis cells. Environmental Research, 2020, 183: 1-11.

Zhili He#,*, Ye Deng#, Meiying Xu#, Juan Li, Junyi Liang, Jinbo Xiong, Hao Yu, Bo Wu, Liyou Wu, Kai Xue, Shengjing Shi, Yolima Carrillo, Joy D. Van Nostrand, Sarah E. Hobbie, Peter B. Reich, Christopher W. Schadt, Angela D. Kent, Elise 6 Pendall, Matthew Wallenstein, Yiqi Luo, Qingyun Yan*, Jizhong Zhou*. Microbial functional genes commonly respond to elevated carbon dioxide. Environment International, 2020, 144: 106068.

Zhujun Wang#, Guangxin Lu#, Mengting Yuan, Hao Yu, Shang Wang, Xin Li, Ye Deng*. Elevated temperature overrides the effects of N amendment in Tibetan grassland on soil microbiome. Soil Biology and Biochemistry, 2019, 136: 107532.

Huayu Qin, Shang Wang, Kai Feng, Zhili He, Marko P. J. Virta, Weiguo Hou, Hailiang Dong, Ye Deng*. Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR. Microbiome, 2019, 7:71.

Ziyan Wei, Yueni Wu, Kai Feng, Min Yang, Yu Zhang, Qichao Tu, Jun Wang, Ye Deng*. ARGA, a pipeline for primer evaluation on antibiotic resistance genes. Environment International, 2019, 128:137-145.

Zhaojing Zhang, Ye Deng*, Kai Feng, Weiwei Cai, Shuzhen Li, Huaqun Yin, Meiying Xu, Daliang Ning, Yuanyuan Qu*. Deterministic assembly and diversity gradient altered the biofilm community performances of bioreactors. Environmental Science & Technology, 2019, 53(3): 1315-1324.

Kai Feng, Yuguang Zhang, Zhili He, Daliang Ning, Ye Deng*. Interdomain ecological networks between plants and microbes. Molecular Ecology Resources, 2019, 19(6): 1565-1577.